MolNFT v1 · #39919 · protein

Structural genomics, the crystal structure of spovg conserved domain from staphylococcus epidermidis atcc 12228

2I9X · Putative septation protein spovg: “Structural genomics, the crystal structure of spovg conserved domain from staphylococcus epidermidis atcc…”. X-ray diffraction. MolNFT v1 #39919 on GenesisL1: 3D structure, binding sites and…

PDB: 2I9X
Type: protein
Length: 171 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative septation protein spovg
UniProt: Q8CML1

Structure

x-ray diffraction · 2 distinct chains · 20% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative septation protein spovg	protein	86	20% helix, 49% strand	Q8CML1
B	Putative septation protein spovg	protein	85	20% helix, 49% strand	Q8CML1

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 966 Å² buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

2I9X · Structural Genomics, the crystal structure of SpoVG conserved domain from Staphylococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Q8CML1 · AlphaFold monomer V2.0 prediction for putative septation protein spovg (Q8CML1) · a predicted model of the same protein · chain B against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8CML1
Elsewhere: RCSB PDB 2I9X · PDBe 2I9X · UniProt Q8CML1

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