Research workbench

Structural genomics, the crystal structure of spovg conserved domain from staphylococcus epidermidis atcc 12228

Analyse Structural genomics, the crystal structure of spovg conserved domain from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2I9X
Type: protein
Length: 171 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative septation protein spovg
UniProt: Q8CML1

Structure

x-ray diffraction · 2 distinct chains · 20% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative septation protein spovg	protein	86	20% helix, 49% strand	Q8CML1
B	Putative septation protein spovg	protein	85	20% helix, 49% strand	Q8CML1

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 966 Å² buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

2I9X · Structural Genomics, the crystal structure of SpoVG conserved domain from Staphylococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Q8CML1 · AlphaFold monomer V2.0 prediction for putative septation protein spovg (Q8CML1) · a predicted model of the same protein · chain B against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8CML1
Elsewhere: RCSB PDB 2I9X · PDBe 2I9X · UniProt Q8CML1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.