MolNFT v1 · #39876 · RNA
Gaaa tetraloop receptor complex with associated manganese ions.
2I7Z · 43-mer: “Gaaa tetraloop receptor complex with associated manganese ions.”. Solution nmr, 1 ligand (MN), 2 pockets (best druggability 0.52). MolNFT v1 #39876 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2I7Z
- Type
- RNA
- Length
- 86 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 43-mer
- Ligands
- MN
- Pockets
- 2 · best druggability 0.52
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 43-mer | rna | 43 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 335 | 0.52 | 0.74 | 19 | MN |
| 2 | 323 | 0.51 | 0.74 | 17 | MN |
Interfaces
1 interface between chains.
- A–B · 765 Ų buried · 30 hydrogen bonds · nucleic-nucleic
Compared structures
- 2I7Z · GAAA tetraloop receptor complex with associated manganese ions. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2I7Z · PDBe 2I7Z
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