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Gaaa tetraloop receptor complex with associated manganese ions.

Analyse Gaaa tetraloop receptor complex with associated manganese ions. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2I7Z
Type: RNA
Length: 86 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 43-mer
Ligands: MN
Pockets: 2 · best druggability 0.52

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	43-mer	rna	43	—	—

Ligands and binding sites

MN · Manganese (II) ion · metal · 10 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	335	0.52	0.74	19	MN
2	323	0.51	0.74	17	MN

Interfaces

1 interface between chains.

A–B · 765 Å² buried · 30 hydrogen bonds · nucleic-nucleic

Compared structures

2I7Z · GAAA tetraloop receptor complex with associated manganese ions. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2I7Z · PDBe 2I7Z

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