MolNFT v1 · #39769 · protein
Rhodopseudomonas palustris prolyl-tRNA synthetase
2I4L · Proline-tRNA ligase: “Rhodopseudomonas palustris prolyl-tRNA synthetase”. X-ray diffraction, 11 pockets (best druggability 0.84). MolNFT v1 #39769 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2I4L
- Type
- protein
- Length
- 1,321 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Proline-tRNA ligase
- EC
- 6.1.1.15
- UniProt
- Q6N5P6
- Pockets
- 11 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proline-tRNA ligase (EC 6.1.1.15) | protein | 439 | 33% helix, 30% strand | Q6N5P6 |
| B, C | Proline-tRNA ligase (EC 6.1.1.15) | protein | 441 | 34% helix, 29% strand | Q6N5P6 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 973 | 0.84 | 0.85 | 108 | empty |
| 2 | 107 | 0.77 | 0.97 | 22 | empty |
| 3 | 907 | 0.75 | 0.78 | 99 | empty |
| 4 | 562 | 0.69 | 0.79 | 60 | empty |
| 5 | 465 | 0.67 | 0.79 | 46 | empty |
Interfaces
3 interfaces between chains.
- A–B · 2461 Ų buried · 35 hydrogen bonds · protein-protein
- B–C · 545 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 253 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N5P6
- Elsewhere: RCSB PDB 2I4L · PDBe 2I4L · UniProt Q6N5P6
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