MolNFT v1 · #3958 · DNA
Ultrahigh resolution crystal structure of B-DNA decamer D(CCAGTACTGG)
1D8G · 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*GP*)-3': “Ultrahigh resolution crystal structure of B-DNA decamer D(CCAGTACTGG)”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #3958 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1D8G
- Type
- DNA
- Length
- 10 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*GP*)-3'
- Ligands
- CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*GP*)-3' | dna | 10 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1D8G · Ultrahigh resolution crystal structure of B-DNA decamer D(CCAGTACTGG) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1D8G · PDBe 1D8G
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