MolNFT v1 · #39300 · protein
Green fluorescent protein from clytia gregaria
2HPW: “Green fluorescent protein from clytia gregaria”. X-ray diffraction, 1 ligand (GYS), 2 pockets (best druggability 0.73). MolNFT v1 #39300 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2HPW
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- Ligands
- GYS
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 228 | 10% helix, 51% strand | — |
Ligands and binding sites
- GYS · [(4Z)-2-(1-amino-2-hydroxyethyl)-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.73 | 0.98 | 21 | GYS |
| 2 | 130 | 0.40 | 0.74 | 25 | empty |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 2HPW · Green fluorescent protein from Clytia gregaria · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2HPW · PDBe 2HPW
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