MolNFT v1 · #3850 · DNA
Crystal structure at 1.5 ångströms resolution of D(CGCICICG), an octanucleotide containing inosine, and its comparison with D(CGCG) and D(CGCGCG) structures
1D53 · DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3'): “Crystal structure at 1.5 ångströms resolution of D(CGCICICG), an octanucleotide containing inosine, and its…”. X-ray diffraction. MolNFT v1 #3850 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1D53
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3'); DNA (5'-D(*CP*GP*CP*G)-3')
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3') | dna | 2 | — | — |
| C, D | DNA (5'-D(*CP*GP*CP*G)-3') | dna | 4 | — | — |
Interfaces
2 interfaces between chains.
- C–D · 237 Ų buried · 14 hydrogen bonds · nucleic-nucleic
- A–B · 128 Ų buried · 9 hydrogen bonds · nucleic-nucleic
Compared structures
- 1D53 · Crystal structure at 1.5 ångströms resolution of D(CGCICICG), an octanucleotide… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1D53 · PDBe 1D53
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