Research workbench
Crystal structure at 1.5 ångströms resolution of D(CGCICICG), an octanucleotide containing inosine, and its comparison with D(CGCG) and D(CGCGCG) structures
Analyse Crystal structure at 1.5 ångströms resolution of D(CGCICICG), an octanucleotide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1D53
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3'); DNA (5'-D(*CP*GP*CP*G)-3')
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3') | dna | 2 | — | — |
| C, D | DNA (5'-D(*CP*GP*CP*G)-3') | dna | 4 | — | — |
Interfaces
2 interfaces between chains.
- C–D · 237 Ų buried · 14 hydrogen bonds · nucleic-nucleic
- A–B · 128 Ų buried · 9 hydrogen bonds · nucleic-nucleic
Compared structures
- 1D53 · Crystal structure at 1.5 ångströms resolution of D(CGCICICG), an octanucleotide… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1D53 · PDBe 1D53
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