MolNFT v1 · #38217 · protein

Solution structure of human NI(II)-SCO1

2GQK · SCO1 protein homolog, mitochondrial: “Solution structure of human NI(II)-SCO1”. Solution nmr, 1 ligand (NI), 1 pocket (best druggability 0.33). MolNFT v1 #38217 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2GQK
Type: protein
Length: 173 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SCO1 protein homolog, mitochondrial
UniProt: O75880
Ligands: NI
Pockets: 1 · best druggability 0.33

Structure

solution nmr · 1 distinct chain · 31% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SCO1 protein homolog, mitochondrial	protein	173	31% helix, 20% strand	O75880

Ligands and binding sites

NI · Nickel (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.33	0.77	16	empty

Compared structures

2GQK · Solution structure of Human Ni(II)-Sco1 · the same entry in another collection · chain A against A, TM-score 1.00
O75880 · AlphaFold monomer V2.0 prediction for protein SCO1 homolog, mitochondrial (O75880) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O75880
Elsewhere: RCSB PDB 2GQK · PDBe 2GQK · UniProt O75880

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