MolNFT v1 · #38184 · protein
100 K structure of glycogen phosphorylase at 2.0 ångströms resolution
2GPN · Glycogen phosphorylase B: “100 K structure of glycogen phosphorylase at 2.0 ångströms resolution”. X-ray diffraction, 12 pockets (best druggability 0.82). MolNFT v1 #38184 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2GPN
- Type
- protein
- Length
- 803 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycogen phosphorylase B
- EC
- 2.4.1.1
- UniProt
- P00489
- Pockets
- 12 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycogen phosphorylase B (EC 2.4.1.1) | protein | 803 | 54% helix, 15% strand | P00489 |
Pockets
12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 193 | 0.82 | 0.96 | 37 | empty |
| 2 | 126 | 0.77 | 0.96 | 40 | empty |
| 3 | 216 | 0.69 | 0.86 | 30 | empty |
| 4 | 121 | 0.55 | 0.82 | 20 | empty |
| 5 | 234 | 0.51 | 0.75 | 29 | empty |
Modifications
Observed in the structure: 1 modified (cofactor).
Compared structures
- 2GPN · 100 K structure of glycogen phosphorylase at 2.0 ångströms resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00489
- Elsewhere: RCSB PDB 2GPN · PDBe 2GPN · UniProt P00489
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