MolNFT v1 · #38019 · protein
Crystal structure of a protein of unknown function from salmonella typhimurium
2GJV · Putative cytoplasmic protein: “Crystal structure of a protein of unknown function from salmonella typhimurium”. X-ray diffraction, 2 ligands (CA, CL), 12 pockets (best druggability 0.45). MolNFT v1 #38019 on GenesisL1: 3D structure…
- PDB
- 2GJV
- Type
- protein
- Length
- 816 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative cytoplasmic protein
- UniProt
- Q8ZKJ0
- Ligands
- CA, CL
- Pockets
- 12 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Putative cytoplasmic protein | protein | 136 | 24% helix, 39% strand | Q8ZKJ0 |
Ligands and binding sites
- CA · Calcium ion · metal · 8 copies · chains A, B, C, D, E, F
- CL · Chloride ion · ion · 6 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.45 | 0.79 | 19 | empty |
| 2 | 63 | 0.44 | 0.82 | 14 | empty |
| 3 | 74 | 0.43 | 0.81 | 17 | empty |
| 4 | 100 | 0.42 | 0.78 | 18 | empty |
| 5 | 97 | 0.42 | 0.78 | 26 | empty |
Interfaces
6 interfaces between chains.
- E–F · 1004 Ų buried · 13 hydrogen bonds · protein-protein
- D–E · 999 Ų buried · 14 hydrogen bonds · protein-protein
- C–D · 986 Ų buried · 17 hydrogen bonds · protein-protein
- A–B · 985 Ų buried · 18 hydrogen bonds · protein-protein
- B–C · 977 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 2GJV · Crystal Structure of a Protein of Unknown Function from Salmonella typhimurium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZKJ0
- Elsewhere: RCSB PDB 2GJV · PDBe 2GJV · UniProt Q8ZKJ0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.