MolNFT v1 · #37921 · protein
Complex of hypothetical glucose-1-phosphate thymidylyltransferase from sulfolobus tokodaii
2GGQ · 401AA long hypothetical glucose-1-phosphate…: “Complex of hypothetical glucose-1-phosphate thymidylyltransferase from sulfolobus tokodaii”. X-ray diffraction, 2 ligands (TTP, IOD), 2 pockets (best druggability 0.77). MolNFT v1…
- PDB
- 2GGQ
- Type
- protein
- Length
- 401 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 401AA long hypothetical glucose-1-phosphate thymidylyltransferase
- EC
- 2.7.7.24
- Ligands
- TTP, IOD
- Pockets
- 2 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 401AA long hypothetical glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) | protein | 401 | 18% helix, 35% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 671 | 0.77 | 0.83 | 65 | IOD, TTP |
| 2 | 71 | 0.30 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2GGQ · complex of hypothetical glucose-1-phosphate thymidylyltransferase from sulfolobus tokodaii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2GGQ · PDBe 2GGQ
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