MolNFT v1 · #35666 · protein
Crystal structure of R1BM endonuclease domain
2EI9 · Non-ltr retrotransposon R1BMKS ORF2 protein: “Crystal structure of R1BM endonuclease domain”. X-ray diffraction, 1 pocket (best druggability 0.43). MolNFT v1 #35666 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2EI9
- Type
- protein
- Length
- 214 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-ltr retrotransposon R1BMKS ORF2 protein
- UniProt
- Q5NTZ0
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-ltr retrotransposon R1BMKS ORF2 protein | protein | 214 | 24% helix, 32% strand | Q5NTZ0 |
Ligands and binding sites
- ACY · Acetic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.43 | 0.75 | 29 | empty |
Compared structures
- 2EI9 · Crystal structure of R1Bm endonuclease domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5NTZ0
- Elsewhere: RCSB PDB 2EI9 · PDBe 2EI9 · UniProt Q5NTZ0
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