MolNFT v1 · #35435 · protein
Crystal structure of LYS11 to met mutant of hypothetical protein from thermus thermophilus
2EBE · Hypothetical protein TTHA0061: “Crystal structure of LYS11 to met mutant of hypothetical protein from thermus thermophilus”. X-ray diffraction, 5 pockets (best druggability 0.59). MolNFT v1 #35435 on GenesisL1: 3D structure, binding…
- PDB
- 2EBE
- Type
- protein
- Length
- 212 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein TTHA0061
- UniProt
- Q5SM82
- Pockets
- 5 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein TTHA0061 | protein | 106 | 27% helix, 40% strand | Q5SM82 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.59 | 0.88 | 17 | empty |
| 2 | 146 | 0.57 | 0.82 | 23 | empty |
| 3 | 79 | 0.56 | 0.87 | 19 | empty |
| 4 | 87 | 0.50 | 0.83 | 21 | empty |
| 5 | 53 | 0.36 | 0.79 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1334 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 2EBE · Crystal structure of Lys11 to Met mutant of hypothetical protein from Thermus thermophilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SM82
- Elsewhere: RCSB PDB 2EBE · PDBe 2EBE · UniProt Q5SM82
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