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Crystal structure of LYS11 to met mutant of hypothetical protein from thermus thermophilus
Analyse Crystal structure of LYS11 to met mutant of hypothetical protein from thermus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2EBE
- Type
- protein
- Length
- 212 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein TTHA0061
- UniProt
- Q5SM82
- Pockets
- 5 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein TTHA0061 | protein | 106 | 27% helix, 40% strand | Q5SM82 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.59 | 0.88 | 17 | empty |
| 2 | 146 | 0.57 | 0.82 | 23 | empty |
| 3 | 79 | 0.56 | 0.87 | 19 | empty |
| 4 | 87 | 0.50 | 0.83 | 21 | empty |
| 5 | 53 | 0.36 | 0.79 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1334 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 2EBE · Crystal structure of Lys11 to Met mutant of hypothetical protein from Thermus thermophilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SM82
- Elsewhere: RCSB PDB 2EBE · PDBe 2EBE · UniProt Q5SM82
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