MolNFT v1 · #35026 · protein
Crystal structure of 16S ribosomal RNA processing protein rimm from thermus thermophilus HB8
2DYI · Probable 16S rRNA-processing protein rimm: “Crystal structure of 16S ribosomal RNA processing protein rimm from thermus thermophilus HB8”. X-ray diffraction, 1 pocket (best druggability 0.47). MolNFT v1 #35026 on GenesisL1: 3D…
- PDB
- 2DYI
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable 16S rRNA-processing protein rimm
- UniProt
- Q5SJH5
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable 16S rRNA-processing protein rimm | protein | 162 | 12% helix, 46% strand | Q5SJH5 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.47 | 0.77 | 17 | empty |
Compared structures
- 2DYI · Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5SJH5 · AlphaFold monomer V2.0 prediction for ribosome maturation factor rimm (Q5SJH5) · a predicted model of the same protein · chain A against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SJH5
- Elsewhere: RCSB PDB 2DYI · PDBe 2DYI · UniProt Q5SJH5
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