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Crystal structure of 16S ribosomal RNA processing protein rimm from thermus thermophilus HB8

Analyse Crystal structure of 16S ribosomal RNA processing protein rimm from thermus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DYI
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable 16S rRNA-processing protein rimm
UniProt: Q5SJH5
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable 16S rRNA-processing protein rimm	protein	162	12% helix, 46% strand	Q5SJH5

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.47	0.77	17	empty

Compared structures

2DYI · Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus… · the same entry in another collection · chain A against A, TM-score 1.00
Q5SJH5 · AlphaFold monomer V2.0 prediction for ribosome maturation factor rimm (Q5SJH5) · a predicted model of the same protein · chain A against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SJH5
Elsewhere: RCSB PDB 2DYI · PDBe 2DYI · UniProt Q5SJH5

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