MolNFT v1 · #34962 · protein
Run domain of RAP2 interacting protein X, crystallized in P2(1)2(1)2(1) space group
2DWG · Protein RUFY3: “Run domain of RAP2 interacting protein X, crystallized in P2(1)2(1)2(1) space group”. X-ray diffraction, 1 pocket (best druggability 0.53). MolNFT v1 #34962 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2DWG
- Type
- protein
- Length
- 316 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein RUFY3
- UniProt
- Q9D394
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Protein RUFY3 | protein | 158 | 61% helix, 3% strand | Q9D394 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 221 | 0.53 | 0.77 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 769 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 2DWG · RUN domain of Rap2 interacting protein x, crystallized in P2(1)2(1)2(1) space group · the same entry in another collection · chain A against A, TM-score 1.00
- Q9D394 · AlphaFold monomer V2.0 prediction for protein RUFY3 (Q9D394) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9D394
- Elsewhere: RCSB PDB 2DWG · PDBe 2DWG · UniProt Q9D394
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