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Run domain of RAP2 interacting protein X, crystallized in P2(1)2(1)2(1) space group

Analyse Run domain of RAP2 interacting protein X, crystallized in P2(1)2(1)2(1) space… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DWG
Type: protein
Length: 316 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein RUFY3
UniProt: Q9D394
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protein RUFY3	protein	158	61% helix, 3% strand	Q9D394

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	221	0.53	0.77	21	empty

Interfaces

1 interface between chains.

A–B · 769 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

2DWG · RUN domain of Rap2 interacting protein x, crystallized in P2(1)2(1)2(1) space group · the same entry in another collection · chain A against A, TM-score 1.00
Q9D394 · AlphaFold monomer V2.0 prediction for protein RUFY3 (Q9D394) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9D394
Elsewhere: RCSB PDB 2DWG · PDBe 2DWG · UniProt Q9D394

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