MolNFT v1 · #34803 · protein

Xray structure of alpha-2,3/8-sialyltransferase cstii F91Y mutant

2DRJ: “Xray structure of alpha-2,3/8-sialyltransferase cstii F91Y mutant”. X-ray diffraction, 1 ligand (CSF), 2 pockets (best druggability 0.61). MolNFT v1 #34803 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2DRJ
Type: protein
Length: 233 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha-2,3/8-sialyltransferase
EC: 2.4.99.-
UniProt: Q9LAK3
Ligands: CSF
Pockets: 2 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alpha-2,3/8-sialyltransferase (EC 2.4.99.-)	protein	233	41% helix, 16% strand	Q9LAK3

Ligands and binding sites

CSF · Cytidine-5'-monophosphate-3-fluoro-N-acetyl-neuraminic acid · ligand · chains A
IPA · Isopropyl alcohol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	367	0.61	0.77	51	CSF
2	70	0.48	0.83	19	IPA

Compared structures

2DRJ · Xray structure of alpha-2,3/8-sialyltransferase CstII F91Y mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LAK3
Elsewhere: RCSB PDB 2DRJ · PDBe 2DRJ · UniProt Q9LAK3

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