MolNFT v1 · #34413 · protein

Xylanase II from tricoderma reesei at 100K

2DFB · Endo-1,4-beta-xylanase 2: “Xylanase II from tricoderma reesei at 100K”. X-ray diffraction, 2 ligands (IOD, SO4), 1 pocket (best druggability 0.49). MolNFT v1 #34413 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2DFB
Type: protein
Length: 190 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-1,4-beta-xylanase 2
EC: 3.2.1.8
UniProt: P36217
Ligands: IOD, SO4
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 62% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-1,4-beta-xylanase 2 (EC 3.2.1.8)	protein	190	5% helix, 62% strand	P36217

Ligands and binding sites

IOD · Iodide ion · ion · 6 copies · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	179	0.49	0.76	27	empty

Modifications

Observed in the structure: 1 modified (cyclization).

Compared structures

2DFB · Xylanase II from Tricoderma reesei at 100K · the same entry in another collection · chain A against A, TM-score 1.00
P36217 · AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase 2 (P36217) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36217
Elsewhere: RCSB PDB 2DFB · PDBe 2DFB · UniProt P36217

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