MolNFT v1 · #34385 · protein
Peptide deformylase catalytic core (residues 1-147), NMR, 20 structures
2DEF: “Peptide deformylase catalytic core (residues 1-147), NMR, 20 structures”. Solution nmr, 1 ligand (NI). MolNFT v1 #34385 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2DEF
- Type
- protein
- Length
- 146 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide deformylase
- EC
- 3.5.1.31
- UniProt
- P0A6K3
- Ligands
- NI
Structure
solution nmr · 1 distinct chain · 22% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide deformylase (EC 3.5.1.31) | protein | 146 | 22% helix, 20% strand | P0A6K3 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 2DEF · Peptide deformylase catalytic core (residues 1-147), NMR, 20 structures · the same entry in another collection · chain A against A, TM-score 1.00
- P0A6K3 · AlphaFold monomer V2.0 prediction for peptide deformylase (P0A6K3) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6K3
- Elsewhere: RCSB PDB 2DEF · PDBe 2DEF · UniProt P0A6K3
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