MolNFT v1 · #34106 · protein

Hypothetical protein from pyrococcus horikoshii OT3

2D5A · Hypothetical protein PH1109: “Hypothetical protein from pyrococcus horikoshii OT3”. X-ray diffraction, 1 ligand (COA), 1 pocket (best druggability 0.36). MolNFT v1 #34106 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2D5A
Type: protein
Length: 142 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein PH1109
UniProt: O58836
Ligands: COA
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein PH1109	protein	142	39% helix, 19% strand	O58836

Ligands and binding sites

COA · Coenzyme A · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.36	0.74	28	COA

Compared structures

2D5A · hypothetical protein from Pyrococcus horikoshii OT3 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58836
Elsewhere: RCSB PDB 2D5A · PDBe 2D5A · UniProt O58836

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