MolNFT v1 · #34104 · protein

Human microglia-specific protein IBA1

2D58 · Allograft inflammatory factor 1: “Human microglia-specific protein IBA1”. X-ray diffraction, 1 ligand (NI). MolNFT v1 #34104 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2D58
Type: protein
Length: 107 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Allograft inflammatory factor 1
UniProt: P55008
Ligands: NI

Structure

x-ray diffraction · 1 distinct chain · 59% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Allograft inflammatory factor 1	protein	107	59% helix, 4% strand	P55008

Ligands and binding sites

NI · Nickel (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

2D58 · Human microglia-specific protein Iba1 · the same entry in another collection · chain A against A, TM-score 1.00
P55008 · AlphaFold monomer V2.0 prediction for allograft inflammatory factor 1 (P55008) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P55008
Elsewhere: RCSB PDB 2D58 · PDBe 2D58 · UniProt P55008

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