MolNFT v1 · #33158 · protein
Cellular retinoic acid binding protein II in complex with a synthetic retinoic acid (ro-13 6307)
2CBS · Protein (crabp-II): “Cellular retinoic acid binding protein II in complex with a synthetic retinoic acid (ro-13 6307)”. X-ray diffraction, 1 ligand (R13), 1 pocket (best druggability 0.77). MolNFT v1 #33158 on GenesisL1: 3D…
- PDB
- 2CBS
- Type
- protein
- Length
- 137 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (crabp-II)
- UniProt
- P29373
- Ligands
- R13
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (crabp-II) | protein | 137 | 13% helix, 55% strand | P29373 |
Ligands and binding sites
- R13 · 3-methyl-7-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-naphthalen-2-yl) -octa-2,4,6-trienoic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 326 | 0.77 | 0.88 | 41 | R13 |
Compared structures
- 2CBS · Cellular retinoic acid binding protein II in complex with a synthetic retinoic acid… · the same entry in another collection · chain A against A, TM-score 1.00
- P29373 · AlphaFold monomer V2.0 prediction for cellular retinoic acid-binding protein 2 (P29373) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29373
- Elsewhere: RCSB PDB 2CBS · PDBe 2CBS · UniProt P29373
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