MolNFT v1 · #3234 · protein
Crystal structure of streptomyces diastaticus NO.7 strain M1033 xylose isomerase at 1.9 a resolution with pseudo-I222 space group
1CLK: “Crystal structure of streptomyces diastaticus NO.7 strain M1033 xylose isomerase at 1.9 a resolution with…”. X-ray diffraction, 2 ligands (MG, CO), 4 pockets (best druggability 0.72). MolNFT v1 #3234 on GenesisL1: 3D structure…
- PDB
- 1CLK
- Type
- protein
- Length
- 387 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylose isomerase
- EC
- 5.3.1.5
- UniProt
- P50910
- Ligands
- MG, CO
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose isomerase (EC 5.3.1.5) | protein | 387 | 49% helix, 10% strand | P50910 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.72 | 0.98 | 23 | empty |
| 2 | 531 | 0.66 | 0.77 | 46 | empty |
| 3 | 73 | 0.48 | 0.83 | 13 | empty |
| 4 | 78 | 0.30 | 0.72 | 18 | empty |
Compared structures
- 1CLK · Crystal structure of streptomyces diastaticus NO.7 strain M1033 xylose isomerase at 1.9 a… · the same entry in another collection · chain A against A, TM-score 1.00
- P50910 · AlphaFold monomer V2.0 prediction for xylose isomerase (P50910) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50910
- Elsewhere: RCSB PDB 1CLK · PDBe 1CLK · UniProt P50910
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