MolNFT v1 · #502231 · protein
AlphaFold monomer V2.0 prediction for xylose isomerase (P50910)
P50910: “AlphaFold monomer V2.0 prediction for xylose isomerase (P50910)”. 4 pockets (best druggability 0.67). MolNFT v1 #502231 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P50910
- Type
- protein
- Length
- 388 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xFe0F6F52e06108B713093Cf01406F947Bc410fED
- Molecule
- Xylose isomerase
- UniProt
- P50910
- Pockets
- 4 · best druggability 0.67
Structure
1 distinct chain · 49% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose isomerase | protein | 388 | 49% helix, 10% strand | P50910 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 551 | 0.67 | 0.77 | 48 | empty |
| 2 | 87 | 0.53 | 0.84 | 14 | empty |
| 3 | 73 | 0.30 | 0.73 | 14 | empty |
| 4 | 54 | 0.27 | 0.74 | 13 | empty |
Compared structures
- 1QT1 · Crystal structure of xylose isomerase from streptomyces diastaticus NO.7 M1033 at 1.85 a… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1QT1 · Crystal structure of xylose isomerase from streptomyces diastaticus NO.7 M1033 at 1.85 a… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1CLK · Crystal structure of streptomyces diastaticus NO.7 strain M1033 xylose isomerase at 1.9 a… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1CLK · Crystal structure of streptomyces diastaticus NO.7 strain M1033 xylose isomerase at 1.9 a… · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50910
- Elsewhere: UniProt P50910 · AlphaFold DB P50910
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