MolNFT v1 · #32294 · protein

Ribosomal elongation factor G (ef-G) fusidic acid resistant mutant T84A

2BM0: “Ribosomal elongation factor G (ef-G) fusidic acid resistant mutant T84A”. X-ray diffraction, 2 ligands (GDP, MG), 7 pockets (best druggability 0.82). MolNFT v1 #32294 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2BM0
Type: protein
Length: 666 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Elongation factor G
UniProt: P13551
Ligands: GDP, MG
Pockets: 7 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Elongation factor G	protein	666	29% helix, 33% strand	P13551

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1133	0.82	0.83	108	empty
2	166	0.54	0.80	25	empty
3	292	0.54	0.75	40	empty
4	61	0.43	0.82	16	empty
5	51	0.41	0.82	17	empty

Compared structures

2BM0 · Ribosomal elongation factor G (EF-G) Fusidic acid resistant mutant T84A · the same entry in another collection · chain A against A, TM-score 1.00
P13551 · AlphaFold monomer V2.0 prediction for elongation factor G (P13551) · a predicted model of the same protein · chain A against A, TM-score 0.72

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13551
Elsewhere: RCSB PDB 2BM0 · PDBe 2BM0 · UniProt P13551

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