MolNFT v1 · #32228 · protein
The pore structure of pneumolysin, obtained by fitting the alpha carbon trace of perfringolysin O into a cryo-EM MAP
2BK1: “The pore structure of pneumolysin, obtained by fitting the alpha carbon trace of perfringolysin O into a…”. Electron microscopy, 1 pocket (best druggability 0.41). MolNFT v1 #32228 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2BK1
- Type
- protein
- Length
- 444 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Perfringolysin O
- UniProt
- P19995
- Pockets
- 1 · best druggability 0.41
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Perfringolysin O | protein | 444 | 0% helix, 0% strand | P19995 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.41 | 0.73 | 30 | empty |
Compared structures
- 2BK1 · The pore structure of pneumolysin, obtained by fitting the alpha carbon trace of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19995
- Elsewhere: RCSB PDB 2BK1 · PDBe 2BK1 · UniProt P19995
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