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The pore structure of pneumolysin, obtained by fitting the alpha carbon trace of perfringolysin O into a cryo-EM MAP

Analyse The pore structure of pneumolysin, obtained by fitting the alpha carbon trace… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2BK1
Type: protein
Length: 444 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Perfringolysin O
UniProt: P19995
Pockets: 1 · best druggability 0.41

Structure

electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Perfringolysin O	protein	444	0% helix, 0% strand	P19995

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	117	0.41	0.73	30	empty

Compared structures

2BK1 · The pore structure of pneumolysin, obtained by fitting the alpha carbon trace of… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19995
Elsewhere: RCSB PDB 2BK1 · PDBe 2BK1 · UniProt P19995

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