MolNFT v1 · #31408 · RNA
Class I GTP aptamer
2AU4 · Class I RNA aptamer to GTP: “Class I GTP aptamer”. Solution nmr, 1 ligand (GTP), 1 pocket (best druggability 0.49). MolNFT v1 #31408 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2AU4
- Type
- RNA
- Length
- 41 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Class I RNA aptamer to GTP
- Ligands
- GTP
- Pockets
- 1 · best druggability 0.49
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Class I RNA aptamer to GTP | rna | 41 | — | — |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.49 | 0.76 | 15 | GTP |
Compared structures
- 2AU4 · Class I GTP aptamer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2AU4 · PDBe 2AU4
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