MolNFT v1 · #31382 · protein
Structure of bacteriorhodopsin at 3.0 ångström by electron crystallography
2AT9: “Structure of bacteriorhodopsin at 3.0 ångström by electron crystallography”. Electron crystallography, 2 ligands (2DP, RET), 3 pockets (best druggability 0.82). MolNFT v1 #31382 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 2AT9
- Type
- protein
- Length
- 222 residues
- Chains
- 1
- Method
- electron crystallography
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacteriorhodopsin
- UniProt
- P02945
- Ligands
- 2DP, RET
- Pockets
- 3 · best druggability 0.82
Structure
electron crystallography · 1 distinct chain · 65% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bacteriorhodopsin | protein | 222 | 65% helix, 3% strand | P02945 |
Ligands and binding sites
- 2DP · 3-[[3-methylphosphono-glycerolyl]phosphonyl]-[1,2-di[2,6,10,14-tetramethyl-hexadecan-16-yl]glycerol · ligand · 8 copies · chains A
- RET · Retinal · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.82 | 0.97 | 26 | RET |
| 2 | 120 | 0.44 | 0.77 | 17 | empty |
| 3 | 59 | 0.31 | 0.75 | 16 | empty |
Modifications
Observed in the structure: 1 cofactor (retinal Schiff base).
Compared structures
- 2AT9 · Structure of bacteriorhodopsin at 3.0 ångström by electron crystallography · the same entry in another collection · chain A against A, TM-score 1.00
- P02945 · AlphaFold monomer V2.0 prediction for bacteriorhodopsin (P02945) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02945
- Elsewhere: RCSB PDB 2AT9 · PDBe 2AT9 · UniProt P02945
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.