MolNFT v1 · #30440 · DNA
Crystal structure of the DNA decamer D(CGCAATTGCG) complexed with the minor groove binding drug netropsin
261D · DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3'): “Crystal structure of the DNA decamer D(CGCAATTGCG) complexed with the minor groove binding drug netropsin”. X-ray diffraction, 1 ligand (NT). MolNFT v1 #30440 on GenesisL1: 3D…
- PDB
- 261D
- Type
- DNA
- Length
- 19 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3')
- Ligands
- NT
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') | dna | 10 | — | — |
| B | DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') | dna | 9 | — | — |
Ligands and binding sites
- NT · Netropsin · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 362 Ų buried · 30 hydrogen bonds · nucleic-nucleic
Compared structures
- 261D · Crystal structure of the DNA decamer D(CGCAATTGCG) complexed with the minor groove… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 261D · PDBe 261D
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