Research workbench
Crystal structure of the DNA decamer D(CGCAATTGCG) complexed with the minor groove binding drug netropsin
Analyse Crystal structure of the DNA decamer D(CGCAATTGCG) complexed with the minor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 261D
- Type
- DNA
- Length
- 19 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3')
- Ligands
- NT
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') | dna | 10 | — | — |
| B | DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') | dna | 9 | — | — |
Ligands and binding sites
- NT · Netropsin · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 362 Ų buried · 30 hydrogen bonds · nucleic-nucleic
Compared structures
- 261D · Crystal structure of the DNA decamer D(CGCAATTGCG) complexed with the minor groove… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 261D · PDBe 261D
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