MolNFT v1 · #30436 · protein
An adaptable metal-binding site engineered into T4 lysozyme
259L · Protein (lysozyme): “An adaptable metal-binding site engineered into T4 lysozyme”. X-ray diffraction, 2 ligands (CO, CL), 1 pocket (best druggability 0.48). MolNFT v1 #30436 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 259L
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (lysozyme)
- EC
- 3.2.1.17
- UniProt
- P00720
- Ligands
- CO, CL
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (lysozyme) (EC 3.2.1.17) | protein | 162 | 64% helix, 9% strand | P00720 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.48 | 0.75 | 28 | CO |
Compared structures
- 259L · An adaptable metal-binding site engineered into T4 lysozyme · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00720
- Elsewhere: RCSB PDB 259L · PDBe 259L · UniProt P00720
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