MolNFT v1 · #30412 · RNA
Crystal structures of an a-form duplex with single-adenosine bulges and a conformational basis for site specific RNA self-cleavage
248D · DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)…: “Crystal structures of an a-form duplex with single-adenosine bulges and a conformational basis for site…”. X-ray diffraction, 1 ligand (SPM). MolNFT v1 #30412 on…
- PDB
- 248D
- Type
- RNA
- Length
- 11 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)- 3'), orthorhombic
- Ligands
- SPM
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)- 3'), orthorhombic | rna | 11 | — | — |
Ligands and binding sites
- SPM · Spermine · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 248D · Crystal structures of an a-form duplex with single-adenosine bulges and a conformational… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 248D · PDBe 248D
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