MolNFT v1 · #29895 · protein

Crystal structure of the E. COLI phosphoglycerate kinase

1ZMR: “Crystal structure of the E. COLI phosphoglycerate kinase”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.50). MolNFT v1 #29895 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1ZMR
Type: protein
Length: 386 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoglycerate kinase
EC: 2.7.2.3
UniProt: P11665
Ligands: CA
Pockets: 2 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglycerate kinase (EC 2.7.2.3)	protein	386	41% helix, 19% strand	P11665

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	131	0.50	0.80	28	empty
2	81	0.39	0.78	21	empty

Compared structures

1ZMR · Crystal Structure of the E. coli Phosphoglycerate Kinase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11665
Elsewhere: RCSB PDB 1ZMR · PDBe 1ZMR · UniProt P11665

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