MolNFT v1 · #29769 · protein
Crystal structure of nickel-bound engineered maltose binding protein
1ZIU · Maltose-binding periplasmic protein: “Crystal structure of nickel-bound engineered maltose binding protein”. X-ray diffraction, 1 ligand (NI), 3 pockets (best druggability 0.58). MolNFT v1 #29769 on GenesisL1: 3D structure, binding…
- PDB
- 1ZIU
- Type
- protein
- Length
- 370 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose-binding periplasmic protein
- UniProt
- P02928
- Ligands
- NI
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose-binding periplasmic protein | protein | 370 | 46% helix, 19% strand | P02928 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 311 | 0.58 | 0.77 | 40 | empty |
| 2 | 83 | 0.44 | 0.80 | 21 | empty |
| 3 | 50 | 0.34 | 0.79 | 19 | empty |
Compared structures
- 1ZIU · Crystal Structure of nickel-bound engineered Maltose Binding Protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02928
- Elsewhere: RCSB PDB 1ZIU · PDBe 1ZIU · UniProt P02928
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