MolNFT v1 · #29651 · DNA

Gga duplex a-DNA

1ZFA · 5'-D(*CP*CP*TP*CP*CP*GP*GP*AP*GP*G)-3': “Gga duplex a-DNA”. X-ray diffraction, 2 ligands (NA, CA). MolNFT v1 #29651 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1ZFA
Type: DNA
Length: 20 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*CP*CP*TP*CP*CP*GP*GP*AP*GP*G)-3'
Ligands: NA, CA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(CPCPTPCPCPGPGPAPGPG)-3'	dna	10	—	—

Ligands and binding sites

NA · Sodium ion · metal · 3 copies · chains A, B
CA · Calcium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 515 Å² buried · 51 hydrogen bonds · nucleic-nucleic

Compared structures

1ZFA · GGA Duplex A-DNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1ZFA · PDBe 1ZFA

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