MolNFT v1 · #29648 · DNA

Gac duplex B-DNA

1ZF7 · 5'-D(*CP*CP*GP*TP*CP*GP*AP*CP*GP*G)-3': “Gac duplex B-DNA”. X-ray diffraction, 2 ligands (CA, NA). MolNFT v1 #29648 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1ZF7
Type: DNA
Length: 20 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*CP*CP*GP*TP*CP*GP*AP*CP*GP*G)-3'
Ligands: CA, NA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(CPCPGPTPCPGPAPCPGPG)-3'	dna	10	—	—

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A, B
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 472 Å² buried · 41 hydrogen bonds · nucleic-nucleic

Compared structures

1ZF7 · GAC Duplex B-DNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1ZF7 · PDBe 1ZF7

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