MolNFT v1 · #29442 · protein

Dnab binding domain of dnag (P16) from bacillus stearothermophilus (residues 452-597)

1Z8S · DNA primase: “Dnab binding domain of dnag (P16) from bacillus stearothermophilus (residues 452-597)”. Solution nmr, 1 pocket (best druggability 0.41). MolNFT v1 #29442 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1Z8S
Type: protein
Length: 146 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA primase
EC: 2.7.7.-
UniProt: Q9X4D0
Pockets: 1 · best druggability 0.41

Structure

solution nmr · 1 distinct chain · 64% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA primase (EC 2.7.7.-)	protein	146	64% helix, 0% strand	Q9X4D0

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	120	0.41	0.75	17	empty

Compared structures

1Z8S · DnaB binding domain of DnaG (P16) from Bacillus stearothermophilus (residues 452-597) · the same entry in another collection · chain A against A, TM-score 1.00
Q9X4D0 · AlphaFold monomer V2.0 prediction for DNA primase (Q9X4D0) · a predicted model of the same protein · chain A against A, TM-score 0.56

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X4D0
Elsewhere: RCSB PDB 1Z8S · PDBe 1Z8S · UniProt Q9X4D0

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