UniProt Q9X4D0
DNA primase (Q9X4D0)
DNA primase (UniProt Q9X4D0), EC 2.7.7.-: 10 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 2 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9X4D0
- Protein
- DNA primase
- EC
- 2.7.7.-
- Experimental structures
- 10
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 2 · 0 records with a druggable one
Structures
11 records of Q9X4D0 in the MolNFT archive: 10 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1D0Q | Structure of the zinc-binding domain of bacillus stearothermophilus DNA primase | x-ray diffraction | A, B | ZN | 1 (best 0.29) |
| 1D0Q | Structure of the zinc-binding domain of bacillus stearothermophilus DNA primase | x-ray diffraction | A, B | — | — |
| 1Z8S | DnaB binding domain of DnaG (P16) from Bacillus stearothermophilus (residues 452-597) | solution nmr | A | — | 1 (best 0.41) |
| 1Z8S | Dnab binding domain of dnag (P16) from bacillus stearothermophilus (residues 452-597) | solution nmr | A | — | — |
| 2R6A | Crystal Form BH1 | x-ray diffraction | C | — | — |
| 2R6A | Crystal form BH1 | x-ray diffraction | C | — | — |
| 2R6C | Crystal Form BH2 | x-ray diffraction | G, H, I | — | — |
| 2R6C | Crystal form BH2 | x-ray diffraction | G, H, I | — | — |
| 4M4W | Mechanistic implications for the bacterial primosome assembly of the structure of a… | x-ray diffraction | G, H, I | — | — |
| 4M4W | Mechanistic implications for the bacterial primosome assembly of the structure of a… | x-ray diffraction | G, H, I | — | — |
| Q9X4D0 | AlphaFold monomer V2.0 prediction for DNA primase (Q9X4D0) | predicted | A | — | — |
Ligands
- ZN · Zinc ion · in 1 record
Experiment against prediction
- 1D0Q chain A against the predicted model Q9X4D0: TM-score 0.96, RMSD 0.89 Å
- 1D0Q chain A against the predicted model Q9X4D0: TM-score 0.96, RMSD 0.89 Å
- 1D0Q chain B against the predicted model Q9X4D0: TM-score 0.96, RMSD 1.33 Å
- 1D0Q chain B against the predicted model Q9X4D0: TM-score 0.96, RMSD 1.33 Å
- 2R6A chain C against the predicted model Q9X4D0: TM-score 0.92, RMSD 1.45 Å
- 2R6A chain C against the predicted model Q9X4D0: TM-score 0.92, RMSD 1.45 Å
- 2R6C chain H against the predicted model Q9X4D0: TM-score 0.92, RMSD 1.44 Å
- 2R6C chain H against the predicted model Q9X4D0: TM-score 0.92, RMSD 1.44 Å
- 2R6C chain I against the predicted model Q9X4D0: TM-score 0.91, RMSD 1.45 Å
- 2R6C chain I against the predicted model Q9X4D0: TM-score 0.91, RMSD 1.45 Å
Elsewhere
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