MolNFT v1 · #29235 · protein
GDP-bound RAB23 GTPase crystallized in P2(1)2(1)2(1) space group
1Z2A · RAS-related protein rab-23: “GDP-bound RAB23 GTPase crystallized in P2(1)2(1)2(1) space group”. X-ray diffraction, 2 ligands (GDP, MG), 1 pocket (best druggability 0.50). MolNFT v1 #29235 on GenesisL1: 3D structure, binding sites…
- PDB
- 1Z2A
- Type
- protein
- Length
- 164 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RAS-related protein rab-23
- UniProt
- P35288
- Ligands
- GDP, MG
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RAS-related protein rab-23 | protein | 164 | 38% helix, 26% strand | P35288 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.50 | 0.78 | 30 | MG, GDP |
Compared structures
- 1Z2A · GDP-Bound Rab23 GTPase crystallized in P2(1)2(1)2(1) space group · the same entry in another collection · chain A against A, TM-score 1.00
- P35288 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-23 (P35288) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35288
- Elsewhere: RCSB PDB 1Z2A · PDBe 1Z2A · UniProt P35288
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