MolNFT v1 · #29148 · protein
Gppnhp-bound RAB9 GTPase
1YZL · RAS-related protein rab-9A: “Gppnhp-bound RAB9 GTPase”. X-ray diffraction, 2 ligands (GNP, MG), 2 pockets (best druggability 0.52). MolNFT v1 #29148 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1YZL
- Type
- protein
- Length
- 172 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RAS-related protein rab-9A
- UniProt
- Q9R0M6
- Ligands
- GNP, MG
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RAS-related protein rab-9A | protein | 172 | 37% helix, 23% strand | Q9R0M6 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 123 | 0.52 | 0.81 | 29 | MG, GNP |
| 2 | 66 | 0.31 | 0.75 | 15 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9R0M6
- Elsewhere: RCSB PDB 1YZL · PDBe 1YZL · UniProt Q9R0M6
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