MolNFT v1 · #29091 · protein

A common binding site for disialyllactose and a tri-peptide in the C-fragment of tetanus neurotoxin

1YXW · Tetanus toxin (tentoxylysin): “A common binding site for disialyllactose and a tri-peptide in the C-fragment of tetanus neurotoxin”. X-ray diffraction, 6 pockets (best druggability 0.48). MolNFT v1 #29091 on GenesisL1: 3D structure…

PDB: 1YXW
Type: protein
Length: 444 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tetanus toxin (tentoxylysin)
EC: 3.4.24.68
UniProt: P04958
Pockets: 6 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tetanus toxin (tentoxylysin) (EC 3.4.24.68)	protein	444	7% helix, 44% strand	P04958

Pockets

6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	148	0.48	0.78	23	empty
2	94	0.38	0.76	16	empty
3	52	0.37	0.81	13	empty
4	51	0.34	0.79	13	empty
5	59	0.32	0.77	19	empty

Compared structures

1YXW · A common binding site for disialyllactose and a tri-peptide in the C-fragment of tetanus… · the same entry in another collection · chain A against A, TM-score 1.00
P04958 · AlphaFold monomer V2.0 prediction for tetanus toxin (P04958) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04958
Elsewhere: RCSB PDB 1YXW · PDBe 1YXW · UniProt P04958

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