MolNFT v1 · #29034 · protein
H-METAP2 complexed with A444148
1YW7 · Methionine aminopeptidase 2: “H-METAP2 complexed with A444148”. X-ray diffraction, 2 ligands (A41, MN), 3 pockets (best druggability 0.68). MolNFT v1 #29034 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1YW7
- Type
- protein
- Length
- 369 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methionine aminopeptidase 2
- EC
- 3.4.11.18
- UniProt
- P50579
- Ligands
- A41, MN
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine aminopeptidase 2 (EC 3.4.11.18) | protein | 369 | 30% helix, 25% strand | P50579 |
Ligands and binding sites
- A41 · 5-methyl-2-[(phenylsulfonyl)amino]benzoic acid · ligand · chains A
- MN · Manganese (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 274 | 0.68 | 0.84 | 40 | A41 |
| 2 | 53 | 0.46 | 0.85 | 17 | empty |
| 3 | 50 | 0.25 | 0.73 | 12 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50579
- Elsewhere: RCSB PDB 1YW7 · PDBe 1YW7 · UniProt P50579
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