MolNFT v1 · #28865 · protein
PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from pyrococcus abyssi
1YR9 · ATP(GTP)BINDING protein: “PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from pyrococcus abyssi”. X-ray diffraction, 2 ligands (GDP, PO4), 1 pocket (best druggability 0.34). MolNFT v1 #28865 on GenesisL1: 3D…
- PDB
- 1YR9
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP(GTP)BINDING protein
- Ligands
- GDP, PO4
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP(GTP)BINDING protein | protein | 246 | 47% helix, 13% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.34 | 0.75 | 21 | PO4 |
Compared structures
- 1YR9 · PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1YR9 · PDBe 1YR9
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