MolNFT v1 · #28672 · protein
The structure of ARGININE/ORNITHINE succinyltransferase subunit ai from pseudomonas aeruginosa.
1YLE · Arginine N-succinyltransferase, alpha chain: “The structure of ARGININE/ORNITHINE succinyltransferase subunit ai from pseudomonas aeruginosa.”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.76). MolNFT v1 #28672…
- PDB
- 1YLE
- Type
- protein
- Length
- 330 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arginine N-succinyltransferase, alpha chain
- EC
- 2.3.1.109
- UniProt
- P80357
- Ligands
- CA
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arginine N-succinyltransferase, alpha chain (EC 2.3.1.109) | protein | 330 | 32% helix, 30% strand | P80357 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 676 | 0.76 | 0.81 | 61 | CA, FMT |
| 2 | 94 | 0.36 | 0.74 | 18 | empty |
| 3 | 53 | 0.32 | 0.77 | 15 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 1YLE · The structure of arginine/ornithine succinyltransferase subunit AI from Pseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
- P80357 · AlphaFold monomer V2.0 prediction for arginine N-succinyltransferase subunit alpha… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80357
- Elsewhere: RCSB PDB 1YLE · PDBe 1YLE · UniProt P80357
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.