MolNFT v1 · #28352 · protein

Crystal structure of the PDZ tandem of human syntenin with syndecan peptide

1YBO: “Crystal structure of the PDZ tandem of human syntenin with syndecan peptide”. X-ray diffraction. MolNFT v1 #28352 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1YBO
Type: protein
Length: 337 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O00560, P31431

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	163	—	O00560
B	—	protein	164	—	O00560
C	—	protein	6	—	P31431
D	—	protein	4	—	P31431

Compared structures

1YBO · Crystal structure of the PDZ tandem of human syntenin with syndecan peptide · the same entry in another collection · chain A against A, TM-score 1.00
P31431 · AlphaFold monomer V2.0 prediction for syndecan-4 (P31431) · a predicted model of the same protein · chain D against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O00560
Every structure of UniProt P31431
Elsewhere: RCSB PDB 1YBO · PDBe 1YBO · UniProt O00560 · UniProt P31431

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